Kim Andrews headshot

Kimberly R. Andrews

  • Research Scientist

I explore questions about how environmental variation influences marine biological diversity over space and time, both within species and across communities of species. I use cutting edge techniques that rely on high-throughput DNA sequencing technologies, such as metabarcoding, RADseq, and multiplex PCR amplicon sequencing. Metabarcoding provides a way to identify the species present in marine communities using plankton samples and environmental DNA (eDNA) water or sediment samples, with much less time and expense than morphology-based techniques such as picking and sorting from plankton or trawl samples. RADseq and amplicon sequencing enable high-resolution characterization of population structure and genetic diversity, and provide insight into how species adapt to different environments at the genomic level. Information from this work helps us understand how individual species and entire ecosystems will respond to environmental change and fishing pressure.

Selected publications

Andrews KR, M De Barba, MA Russello, LP Waits. 2018. Advances in using non-invasive, archival, and environmental samples in population genomic studies. In: PA Hohenlohe, OP Rajora (ed.) Population Genomics: Wildlife, Springer Nature

Andrews KR, JR Adams, EF Cassirer, RK Plowright, C Gardner, M Dwire, PA Hohenlohe, LP Waits. 2018. A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data. Molecular Ecology Resources. DOI:10.1111/1755-0998.12910

Catchen J, PA Hohenlohe, L Bernatchez, WC Funk, KR Andrews, F Allendorf. 2017. Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations. Molecular Ecology Resources. 17(3): 362-365. DOI:10.1111/1755-0998.12669

Cammen CM, KR Andrews, EL Carroll, AD Foote, E Humble, JI Khudyakov, M Louis, MR McGowen, MT Olsen, AM VanCise. 2016. Genomic methods take the plunge: recent advances in high-throughput sequencing of marine mammals. Journal of Heredity 107(6):481-495. DOI:10.1093/jhered/esw044 (Invited Review)

Bowen BW, MR Gaither, JD DiBattista, M Iacchei, KR Andrews, WS Grant, RJ Toonen, JC Briggs. 2016. Comparative Phylogeography of the Ocean Planet. Proceedings of the National Academy of Sciences 113(29):7962-7969. DOI: 10.1073/pnas.1602404113.

Andrews KR, A Williams, I Fernandez-Silva, S Newman, J Copus, J Randall, BW Bowen. 2016. Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic. Molecular Phylogenetics & Evolution 100:361-371. DOI:10.1016/j.ympev.2016.04.004.

Andrews KR, JM Good, MR Miller, G Luikart, PA Hohenlohe. 2016. Harnessing the power of RADseq for ecological and evolutionary genomics. Nature Reviews Genetics 17(81-92). DOI:10.1038/nrg.2015.28.

Andrews KR, E Norton, I Fernandez-Silva, E Portner, E Goetze. 2014. Multilocus evidence for globally-distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod. Molecular Ecology 23(22):5462-79. DOI: 10.1111/mec.12950.

Andrews KR, PA Hohenlohe, MR Miller, B Hand, JE Seeb, G Luikart. 2014. Trade-offs and utility of alternative RADseq methods: Reply to Puritz et al. 2014. Molecular Ecology 23:5943-5946. DOI: 10.1111/mec.12964

Andrews KR, G Luikart. 2014. Recent novel approaches for population genomics data analysis. Molecular Ecology 23:1661-1667. DOI: 10.1111/mec.12686.

Andrews KR, V Moriwake, C Wilcox, EG Grau, C Kelley, RL Pyle, BW Bowen. 2014. Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis “marshi” (Family Lutjanidae) reveal concordant genetic structure across the Hawaiian Archipelago. PLoS ONE 9(4)e91665. DOI: 10.1371/journal.pone.0091665.

Selkoe AS, OE Gaggiotti, KR Andrews, MA Bernal, C Bird, H Bolick, I Baums, R Coleman, GT Concepcion, MT Craig, JD DiBattista, J Eble, I Fernandez-Silva, MR Gaither, M Iacchei, NR Polato, MAJ Rivera LA Rocha, D Skillings, M Timmers, Z Szabo, BW Bowen, RJ Toonen. 2014. Emergent patterns of population genetic structure for a coral reef community. Molecular Ecology 23:3064-3079. DOI:10.1111/mec.12804.

Andrews KR, WF Perrin, M Oremusk, L Karczmarski, BW Bowen, JB Puritz, RJ Toonen. 2013. The evolving male: spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers. Molecular Ecology 22(9):2408-23. DOI: 10.1111/mec.12193..

Rivera MAJ*, KR Andrews*, D Kobayashi, J Wren, C Kelley, GK Roderick, RJ Toonen. 2011. Genetic analyses and simulations of larval dispersal reveal distinct populations and directional connectivity across the range of the Hawaiian Grouper (Epinephelus quernus). Journal of Marine Biology 2011: Article ID 765353. DOI:10.1155/2011/765353. *Equal contribution

Andrews KR, L Karczmarski, WWL Au, SH Rickards, CAVanderlip, BW Bowen, E Gordon Grau, RJ Toonen. 2010. Rolling stones and stable homes: Social structure, habitat diversity, and population genetics of the Hawaiian spinner dolphin (Stenella longirostris). Molecular Ecology 19:732-748. DOI:10.1155/2011/934269.